Genomics

Here is a list of all publicly available genome sequences of Colletotrichum spp. Thanks to Riccardo Baroncelli for compiling this list.

Organisms Strain Host Origin Accession N°   Ref
C. graminicola M1.001 Zea mays USA ACOD00000000.1 1
C. orbiculare MAFF 240422 Cucumis sativus Japan AMCV00000000.1 2
C. gloeosporioides Cg-14 Persea americana Israel AMYD00000000.1 3
C. fructicola Nara gc5 Fragaria x ananassa Japan ANPB00000000.1 2
C. scovillei TJNH1 Capsicum annuum China JAAJBS000000000.1 * 4
C. truncatum KLC.C- 4 Capsicum annuum India JAATLN000000000.1 * Unpublished
C. siamense CsLH17 Camellia oleifera China JAATWJ000000000.1 * Unpublished
C. camelliae CcLH18 Camellia oleifera China JAATWK000000000.1 * Unpublished
C. gloeosporioides CgLH19 Camellia oleifera China JAATWL000000000.1 * Unpublished
C. karsti CkLH20 Camellia oleifera China JAATWM000000000.1 * Unpublished
C. theobromicola CF75 Fragaria x ananassa USA JABGLZ000000000.1 * 5
C. siamense KY748 Fragaria x ananassa USA JABGMA000000000.1 * 5
C. nymphaeae KY745 Fragaria x ananassa USA JABGMB000000000.1 * 5
C. siamense KY687 Fragaria x ananassa USA JABGMC000000000.1 * 5
C. fioriniae KY615 Fragaria x ananassa USA JABGMD000000000.1 * 5
C. nymphaeae KY613 Fragaria x ananassa USA JABGME000000000.1 * 5
C. nymphaeae KY567 Fragaria x ananassa USA JABGMF000000000.1 * 5
C. nymphaeae KY563 Fragaria x ananassa USA JABGMG000000000.1 * 5
C. gloeosporioides KY332 Fragaria x ananassa USA JABGMH000000000.1 * 5
C. siamense KY777 Prunus persica USA JABGMI000000000.1 * 5
C. fioriniae KY648 Vaccinium sp. USA JABGMJ000000000.1 * 5
C. fioriniae KY646 Vaccinium sp. USA JABGMK000000000.1 * 5
C. fioriniae KY640 Vaccinium sp. USA JABGML000000000.1 * 5
C. fioriniae KY119 Vaccinium sp. USA JABGMM000000000.1 * 5
C. fioriniae KY116 Vaccinium sp. USA JABGMN000000000.1 * 5
C. fioriniae KY323 Malus domestica USA JABGMO000000000.1 * 5
C. siamense KY8 Malus domestica USA JABGMP000000000.1 * 5
C. fioriniae KY6 Malus domestica USA JABGMQ000000000.1 * 5
C. siamense KY540 Malus domestica USA JABGMR000000000.1 * 5
C. siamense KY254 Malus domestica USA JABGMS000000000.1 * 5
C. theobromicola KY152 Malus domestica USA JABGMT000000000.1 * 5
C. siamense KY146 Malus domestica USA JABGMU000000000.1 * 5
C. nymphaeae HC646 Malus domestica USA JABGMV000000000.1 * 5
C. fructicola HC540 Malus domestica USA JABGMW000000000.1 * 5
C. fioriniae HC296 Malus domestica USA JABGMX000000000.1 * 5
C. sp. HC292 Malus domestica USA JABGMY000000000.1 * 5
C. fioriniae HC25 Malus domestica USA JABGMZ000000000.1 * 5
C. siamense HBCG01 Hevea brasiliensis China JABKAM000000000.1 * 6
C. australisinense GX1655 Hevea brasiliensis China JABKAN000000000.1 * 6
C. sp. HC278 Malus domestica USA JABSTW000000000.1 * 5
C. fioriniae IMI 504882 Fragaria x ananassa New Zealand JARH00000000.1 7
C. nymphaeae IMI 504889 Fragaria x ananassa Denmark JEMN00000000.1 8
C. simmondsii CBS 122122 Carica papaya Australia JFBX00000000.1 8
C. salicis CBS 607.94 Salix sp. Netherlands JFFI00000000.1 8
C. sublineola TX430BB Sorghum bicolor USA JMSE00000000.1 9
C. incanum MAFF 238712 Raphanus sativus Japan JTLR00000000.1 10
C. coccodes RP180a Capscicum annuum USA LECP00000000.1 * Unpublished
C. coccodes NJ-RT1 Capscicum annuum USA LECQ00000000.1 * Unpublished
C. tofieldiae CBS 495.85 Tofieldia calyculata Switzerland LFHP00000000.1 * 11
C. tofieldiae CBS 168.49 Lupinus polyphyllus Germany LFHQ00000000.1 * 11
C. tofieldiae CBS 127615 Agapanthus sp. Portugal LFHR00000000.1 * 11
C. tofieldiae CBS 130851 Semele androgyna Germany LFHS00000000.1 * 11
C. tofieldiae 861 Arabidopsis thaliana Spain LFIV00000000.1 11
C. incanum MAFF 238704 Raphanus sativus Japan LFIW00000000.1 11
C. falcatum Cf671 Saccharum officinarum India LPVI00000000.1 * 12
C. higginsianum IMI 349063 Brassica rapa Trinidad & Tobago LTAN00000000.1 13
C. acutatum KC05 Capscicum annuum South Korea LUXP00000000.1 * 14
C. acutatum C71 Olea europaea Italy LVCK00000000.1 * Unpublished
C. godetiae C184 Olea europaea Italy LZRM00000000.1 * Unpublished
C. lindemuthianum 83.501 Phaseolus vulgaris Brazil MASO02000000.1 * 15
C. lindemuthianum 89 A2 2-3 Phaseolus vulgaris Brazil MASP02000000.1 * 15
C. orchidophilum IMI 309357 Phalaenopsis sp. United Kingdom MJBS00000000.1 16
C. chlorophyti NTL11 Solanum lycopersicum Japan MPGH00000000.1 17
C. sublineola CgSl1 Sorghum bicolor USA MQVQ00000000.1 * 18
C. graminicola M5.001 Zea mays Brazil MRBI00000000.1 * 18
C. fructicola 1104-7 Malus domestica China MVNS00000000.1 * 19
C. higginsianum MAFF305635.RFP Brassica rapa var. perviridis Japan MWPZ00000000.1 20
C. gloeosporioides 30206 Malus domestica China MWUF00000000.1 * 21
C. truncatum MTCC 3414 Capscicum annuum India NBAU00000000.1 * 22
C. sansevieriae Sa-1-2 Sansevieria trifasciata Japan NJHP00000000.1 * 23
C. gloeosporioides TYU Taxus cuspidata South Korea NOWE00000000.1 * Unpublished
C. lentis CT-30 Lens culinaris Canada NWBT00000000.1 * 24
C. musae GM20 Musa acuminata Brazil NWMS00000000.1 * 25
C. fructicola 15060 Mangifera indica China PHOC00000000.1 * 26
C. tanaceti BRIP5731 Tanacetum cinerariifolim Australia PJEX00000000.1 27
C. fioriniae HC89 Malus domestica USA PNFH00000000.1 * 28
C. fioriniae HC91 Malus domestica USA PNFI00000000.1 * 28
C. shisoi JCM 31818 Perilla frutescens var. crispa Japan PUHP00000000.1 29
C. sidae CBS 518.97 Sida spinosa USA QAPF00000000.1 30
C. spinosum CBS 115.97 Xanthium spinosum Australia QAPG00000000.1 30
C. sp. JS-367 Morus sp. South Korea QCWU00000000.1 * Unpublished
C. gloeosporioides SMCG1#C Cunninghamia lanceolata China QFRH00000000.1 * 31
C. fructicola Cg38 S1 Fragaria x ananassa Japan QLYQ00000000.1 32
C. tropicale CgS9275 Morus sp. Japan QPMP00000000.1 32
C. viniferum CGW01 Vitis sp. Japan QPMQ00000000.1 32
C. siamense CAD5 Manihot esculenta Viet Nam QPMR00000000.1 32
C. siamense CAD4 Manihot esculenta Viet Nam QPMS00000000.1 32
C. siamense CAD2 Manihot esculenta Viet Nam QPMT00000000.1 32
C. siamense CAD1 Manihot esculenta Viet Nam QPMU00000000.1 32
C. fructicola CfS4 Fragaria x ananassa Japan QPMV00000000.1 32
C. fructicola Cf415 Fragaria x ananassa Japan QPMW00000000.1 32
C. fructicola Cf413 Fragaria x ananassa Japan QPMX00000000.1 32
C. fructicola Cf245 Fragaria x ananassa Japan QPMY00000000.1 32
C. siamense Cg363 Fragaria x ananassa Japan QPNA00000000.1 32
C. aenigma Cg56 Fragaria x ananassa Japan QPNB00000000.1 32
C. gloeosporioides Cg01 Huperzia serrata China QRFY00000000.1 * 33
C. gloeosporioides ES026 Huperzia serrata China QXIZ00000000.1 * 33
C. siamense ICMP 18578 Coffea arabica Thailand RJJI00000000.1 * 34
C. trifolii MAFF 305078 Medicago sativa Japan RYZW00000000.1 30
C. fructicola CGMCC3.17371 Fragaria x ananassa China SSNE00000000.1 35
C. sp. COLG31 Citrus sp. Pakistan VNWS00000000.1 * Unpublished
C. sp. COLG25 Citrus sp. Pakistan VNWT00000000.1 * Unpublished
C. truncatum KLC.C5 Capscicum annuum India VRTN00000000.1 * Unpublished
C. truncatum 1059 Glycine max Brazil VUJX01000000.1 36
C. siamense COLG-34 Citrus sp. Pakistan WEZJ00000000.1 * Unpublished
C. siamense COLG-38 Citrus sp. Pakistan WEZK00000000.1 * Unpublished
C. siamense COLG-44 Citrus sp. Pakistan WEZL00000000.1 * Unpublished
C. siamense COLG-50 Citrus sp. Pakistan WEZM00000000.1 * Unpublished
C. siamense COLG-90 Citrus sp. Pakistan WEZN00000000.1 * Unpublished
C. gloeosporioides COLG-95 Citrus sp. Pakistan WEZO00000000.1 * Unpublished
C. musicola LFN0074 Glycine max Brazil WIGM00000000.1 36
C. sojae LFN0009 Glycine max Brazil WIGN00000000.1 36
C. plurivorum LFN00145 Glycine max Brazil WIGO00000000.1 36
C. asianum ICMP 18580 Coffea sp. Thailand WOWK00000000.1 37
C. gloeosporioides Lc1 Liriodendron chinense China WVTB00000000.1 38
C. destructivum YC1 Nicotiana benthamiana China WWFS00000000.1 * Unpublished

 

* No gene prediction or annotation have been submitted

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