Genomics

Here is a list of all publicly available genome sequences of Colletotrichum spp. Thanks to Riccardo Baroncelli for compiling this list.

Strain

Organisms

Abbr.

Host

Origin

Accession N°

reference

M1.001

C. graminicola

CGRA01

Zea mays

USA

ACOD00000000.1

1

IMI 349063

C. higginsianum

CHIG01

Brassica rapa

Trinidad & Tobago

LTAN00000000.1

1

MAFF 240422

C. orbiculare

CORB01

Cucumis sativus

Japan

AMCV00000000.1

2

Cg-14

C. gloeosorioides

CGLO01

Persea americana

Israel

AMYD00000000.1

3

Nara gc5

C. fruticola*

CFRU01

Fragaria x ananassa

Japan

ANPB00000000.1

2

IMI 504882

C. fioriniae

CFIO01

Fragaria x ananassa

New Zealand

JARH00000000.1

4

IMI 504889

C. nymphaeae

CNYM01

Fragaria x ananassa

Denmark

JEMN00000000.1

5

CBS 122122

C. simmondsii

CSIM01

Carica papaya

Australia

JFBX00000000.1

5

CBS 607.94

C. salicis

CSAL01

Salix sp.

Netherlands

JFFI00000000.1

5

TX430BB

C. sublineola

CSUB01

Sorghum bicolor

USA

JMSE00000000.1

6

CBS 495.85

C. tofieldiae

CTOF03

Tofieldia calyculata

Switzerland

LFHP00000000.1

7

CBS 168.49

C. tofieldiae

CTOF04

Lupinus polyphyllus

Germany

LFHQ00000000.1

7

CBS 127615

C. tofieldiae

CTOF05

Agapanthus sp.

Portugal

LFHR00000000.1

7

CBS 130851

C. tofieldiae

CTOF02

Semele androgyna

Germany

LFHS00000000.1

7

861

C. tofieldiae

CTOF01

Arabidopsis thaliana

Spain

LFIV00000000.1

7

MAFF 238704

C. incanum

CINC01

Raphanus sativus

Japan

LFIW00000000.1

8

Cf671

C. falcatum

CFAL01

Saccharum officinarum

India

LPVI00000000.1 §

9

KC05

C. scovillei**

CSCO01

Capscicum annuum

South Korea

LUXP00000000.1 §

10

C71

C. acutatum s.s.

CACT01

Olea europaea

Italy

LVCK00000000.1 §

unpublished

C184

C. godetiae

CGOE01

Olea europaea

Italy

LZRM00000000.1 §

unpublished

83.501

C. lindemuthianum

CLID01

Phaseolus vulgaris

Brazil

MASO00000000.1 §

unpublished

89 A2 2-3

C. lindemuthianum

CLID02

Phaseolus vulgaris

Brazil

MASP00000000.1 §

unpublished

1 O’Connell RJ, Thon MR, Hacquard S, et al. Lifestyle transitions in plant pathogenic Colletotrichum fungi deciphered by genome and transcriptome analyses. Nature Genetics 2012;44:1060-5.

2 Gan P, Ikeda K, Irieda H, et al. Comparative genomic and transcriptomic analyses reveal the hemibiotrophic stage shift of Colletotrichum fungi. New Phytologist 2013;197:1236-49.

3 Alkan N, Meng X, Friedlander G, et al. Global aspects of pacC regulation of pathogenicity genes in Colletotrichum gloeosporioides as revealed by transcriptome analysis. Molecular Plant-Microbe Interactions 2013;26:1345-58.

4 Baroncelli R, Sreenivasaprasad S, Sukno SA, et al. Draft Genome Sequence of Colletotrichum acutatum sensu lato (Colletotrichum fioriniae). Genome Announcement 2014;2:e00112–4.

5 Baroncelli R, Amby DB, Zapparata A, et al. Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum. BMC genomics 2016;in press

6 Baroncelli R, Sanz-Martin JM, Rech GE, et al. Draft Genome Sequence of Colletotrichum sublineola, a Destructive Pathogen of Cultivated Sorghum. Genome Announcement 2014;2:e00540–14.

7 Hacquard S, Kracher B, Hiruma K, et al. Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi. Nature Communications 2016 May 6;7:11362

8 Gan P, Narusaka M, Kumakura N, et al.Colletotrichum Species Reveal Specific Gene Family Losses and Gains during Adaptation to Specific Infection Lifestyle. Genome Biology and Evolution 2016;8(5):1467-1481.

9 Viswanathan R, Prasanth CN, Malathi P, Sundar AR. Draft Genome Sequence of Colletotrichum falcatum – A Prelude on Screening of Red Rot Pathogen in Sugarcane. Journal of Genomics 2016;30;4:1-3

10 Han JH, Chon JK, Ahn JH, et al. Whole genome sequence and genome annotation of Colletotrichum acutatum, causal agent of anthracnose in pepper plants in South Korea. Genome Data 2016;28;8:45-6

* deposited as C. gloeosporioides

** deposited as C. acutatum

§ NO ANNOTATION SUBMITTED